dbos – Kavli Institute Pre-Print Publications

Genomic resources for comparative analyses of obligate avian brood parasitism

Posted by dbos August 15, 2025August 18, 2025Rockefeller, This Week: Neuroscience

Kavli Affiliate: Erich Jarvis | Authors: Rachel A Carroll, Edward Stallknecht Ricemeyer, LaDeana W Hillier, Jeffrey M DaCosta, Ekaterina Osipova, Sara Smith, Gabriel Jamie, Juan Gabriel Martinez, Mercedes Molina-Morales, Tomas Marques-Bonet, Joseph D Manthey, Diana Haddad, Matthew J Fuxjager, Kathleen S Lynch, Jonathan M.D. Wood, Erich Jarvis, Patrick Masterson, Francoise Thibaud-Nissen, Mark Hauber, Claire N […]

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Novel Predictive Spatial Biomarker in Non-Small Cell Lung Carcinoma: The Diversity of Niches Unlocking Treatment Sensitivity (DONUTS)

Posted by dbos August 15, 2025August 18, 2025Hopkins, This Week: Neuroscience

Kavli Affiliate: Alexander Szalay | Authors: Tricia R Cottrell, Jeffrey S Roskes, Michael Fotheringham, Emily Cohen, Boyang Zhang, Logan L Engle, Daphne Wang, Elizabeth Will, Joel C Sunshine, Daniel Jimenez-Sanchez, Zhen Zheng, Justina X Caushi, Jiajia Zhang, Nina D’Amiano, Julie Stein-Deutsch, Sonali Uttam, Katie Pirie, Darah Vlaminck, Michelle Mataj, Alexa Fiorante, Nicole Espinosa, Teodora Popa, […]

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Spatial Transcriptomics Reveal Developmental Dynamics of the Human Cerebral Cortex and Striatum

Posted by dbos August 15, 2025August 18, 2025Rockefeller, This Week: Neuroscience

Kavli Affiliate: Li Zhao | Authors: Yunjia Zhang, Youning Lin, Xunan Shen, Xue Xiao, Cai Song, Xiaobo Shi, Tao Zhou, Yanxin Li, Zihan Wu, Zhenkun Zhuang, Chunqiong Li, Meng Li, Feng Wen, Jianlin Liu, Lei Cao, Qiangqiang Zhang, Zhao-Lu Li, Songbo Zhang, Susu Qu, Yaqi Li, Jianhua Yao, Fubaoqian Huang, Xin Liu, Ziqing Deng, Longqi […]

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Autism-associated Scn2a haploinsufficiency disrupts in vivo dendritic signaling and impairs flexible decision-making

Posted by dbos August 14, 2025August 18, 2025This Week: Neuroscience, UCSF

Kavli Affiliate: Kevin Bender | Authors: Hao Wu, Luqun Shen, Jonathan Indajang, Neil K Savalia, Timothy G Johnson, Jiayin Qu, Kevin J Bender and Alex C Kwan | Summary: SCN2A is a high-confidence risk gene for autism spectrum disorder. Loss-of-function mutations in Scn2a reduce dendritic excitability in neocortical pyramidal cells. However, the impact of Scn2a […]

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Reconstructing Waddington’s Landscape from Data

Posted by dbos August 13, 2025August 18, 2025Rockefeller, This Week: Neuroscience

Kavli Affiliate: Eric D. Siggia | Authors: Dillon J. Cislo, M Joaquina Delás, James Briscoe and Eric D. Siggia | Summary: The development of a zygote into a functional organism requires that this single progenitor cell gives rise to numerous distinct cell types. Attempts to exhaustively tabulate the interactions within developmental signaling networks that coordinate […]

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Accessible, realistic genome simulation with selection using stdpopsim

Posted by dbos August 12, 2025August 18, 2025Columbia, This Week: Neuroscience

Kavli Affiliate: Scott Small | Authors: Graham Gower, Nathaniel S. Pope, Murillo F. Rodrigues, Silas Tittes, Linh N. Tran, Ornob Alam, Maria Izabel Alves Cavassim, Peter D. Fields, Benjamin C. Haller, Xin Huang, Ben Jeffrey, Kevin Korfmann, Christopher C. Kyriazis, Jiseon Min, Ines Rebollo, Clara T Rehmann, Scott T. Small, Christopher C. R. Smith, Georgia […]

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Circuit inhibition promotes the dynamic reorganization of prefrontal task encoding to support cognitive flexibility

Posted by dbos August 10, 2025August 18, 2025This Week: Neuroscience, UCSF

Kavli Affiliate: Vikaas Sohal | Authors: Carlos Johnson-Cruz, Kathleen K.A. Cho and Vikaas S. Sohal | Summary: The mammalian prefrontal cortex encodes variables related to goal-directed behavior, and enables flexibility during environmental changes, making it critical to understand how the dynamic updating vs. stable maintenance of different encodings contribute to behavioral adaptation. We addressed this […]

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Circuit inhibition promotes the dynamic reorganization of prefrontal task encoding to support cognitive flexibility

Posted by dbos August 10, 2025August 18, 2025UCSF

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Causal Dynamics of Social Gaze in Primate Prefrontal-Amygdala Networks Revealed by Dynamic Bayesian Modeling

Posted by dbos August 10, 2025August 18, 2025Yale

Kavli Affiliate: Anirvan Nandy | Authors: Feng Xing, Siqi Fan, Olga Dal Monte, Monika Jadi, Steve Chang and Anirvan Nandy | Summary: Social gaze is a fundamental channel of primate communication, shaping dynamic interactions and fostering mutual understanding. While prior studies have mapped the behavioral correlates of social gaze across the prefrontal-amygdala circuits, the causal […]

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A Scalable Toolkit for Modeling 3D Surface-based Brain Geometry

Posted by dbos August 9, 2025August 18, 2025UCSD / Salk

Kavli Affiliate: Anders Dale and Lisa T. Eyler | Authors: Yanghee Im, Leila Nabulsi, Melody J.Y. Kang, Sophia I. Thomopoulos, Ana M. Diaz Zuluaga, Anders M. Dale, Andriana Karuk, Annabella Di Giorgio, Benson Mwangi, Boris Gutman, Bronwyn Overs, Carlos Lopez Jaramillo, Colm McDonald, Dan Stein, Dara M. Cannon, David Glahn, Diego Hidalgo-Mazzei, Diliana Pecheva, Dominik […]

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