Transcriptional response to chronic long-access fentanyl self-administration in rat habenula and amygdala

Endothelial type I interferon signaling modulates the vascular response to ischemic brain injury Kavli Affiliate: Patricia Janak | Authors: Robin Magnard, Daianna Gonzalez-Padilla, Ege A. Yalcinbas, Emma Chaloux-Pinette, Nicholas J. Eagles, Michael S. Totty, Patricia H. Janak, Leonardo Collado-Torres and Kristen R. Maynard | Summary: Fentanyl is a potent synthetic opioid associated with overdose. However, […]


Continue.. Transcriptional response to chronic long-access fentanyl self-administration in rat habenula and amygdala

Mapping spatial gradients in spatial transcriptomics data with score matching

Endothelial type I interferon signaling modulates the vascular response to ischemic brain injury Kavli Affiliate: Laurent Younes | Authors: An Wang, Donald Geman, Uthsav Chitra and Laurent Younes | Summary: Spatial transcriptomics (ST) technologies measure gene expression at thousands of locations within a two-dimensional tissue slice, enabling the study of spatial gene expression patterns. Spatial […]


Continue.. Mapping spatial gradients in spatial transcriptomics data with score matching

STcompare: comparative spatial transcriptomics data analysis of structurally matched tissues to characterize differentially spatially patterned genes

Endothelial type I interferon signaling modulates the vascular response to ischemic brain injury Kavli Affiliate: Jean Fan | Authors: Kalen Clifton, Vivien Jiang, Rafael dos Santos Peixoto, Srujan Singh, Ryo Matsuura, Hamid Rabb and Jean Fan | Summary: Comparative analysis of spatial transcriptomics (ST) data is needed to identify genes that spatially change in their […]


Continue.. STcompare: comparative spatial transcriptomics data analysis of structurally matched tissues to characterize differentially spatially patterned genes

Sex and experience dependent regulation of synaptic protein turnover

Endothelial type I interferon signaling modulates the vascular response to ischemic brain injury Kavli Affiliate: Richard Huganir | Authors: Seok Heo, Shiyu Zhang, Dong-Gi Mun, Akhilesh Pandey, Alexei M Bygrave and Richard L. Huganir | Summary: Synaptic transmission can be carefully tuned through plasticity mechanisms that regulate synaptic strength, structure, and number. In vivo measurements […]


Continue.. Sex and experience dependent regulation of synaptic protein turnover

Orchestrating Spatial Transcriptomics Analysis with Bioconductor

Endothelial type I interferon signaling modulates the vascular response to ischemic brain injury Kavli Affiliate: Keri Martinowich | Authors: Helena L Crowell, Yixing Dong, Ilaria Billato, Peiying Cai, Martin Emons, Samuel Gunz, Boyi Guo, Mengbo Li, Alexandru Mahmoud, Artür Manukyan, Hervé Pagès, Pratibha Panwar, Shreya Rao, Callum J Sargeant, Lori Shepherd Kern, Marcel Ramos, Jieran […]


Continue.. Orchestrating Spatial Transcriptomics Analysis with Bioconductor

APOE E4 Alzheimer’s Risk Converges on an Oligodendrocyte Subtype in the Human Entorhinal Cortex

Endothelial type I interferon signaling modulates the vascular response to ischemic brain injury Kavli Affiliate: Keri Martinowich | Authors: Louise A. Huuki-Myers, Heena R. Divecha, Svitlana V. Bach, Madeline R. Valentine, Nicholas J. Eagles, Bernard Mulvey, Rahul A. Bharadwaj, Ruth Zhang, James R. Evans, Melissa Grant-Peters, Ryan A. Miller, Joel E. Kleinman, Shizhong Han, Thomas […]


Continue.. APOE E4 Alzheimer’s Risk Converges on an Oligodendrocyte Subtype in the Human Entorhinal Cortex

CUSP: Complex Spike Sorting from Multi-electrode Array Recordings with U-net Sequence-to-Sequence Prediction

Endothelial type I interferon signaling modulates the vascular response to ischemic brain injury Kavli Affiliate: Kathleen Cullen | Authors: Chenhao Bao, Robyn Mildren, Adam Charles and Kathleen E Cullen | Summary: Background Complex spikes (CSs) in cerebellar Purkinje cells convey unique signals complementary to Simple spike (SS) action potentials, but are infrequent and variable in […]


Continue.. CUSP: Complex Spike Sorting from Multi-electrode Array Recordings with U-net Sequence-to-Sequence Prediction

Visual landmark coding and dynamic coupling with path integration circuits in area 29e of the rodent parahippocampal cortex

Endothelial type I interferon signaling modulates the vascular response to ischemic brain injury Kavli Affiliate: James Knierim | Authors: Gorkem Secer, Bharath Krishnan, Noah Cowan and James J Knierim | Summary: The brain relies on external landmarks to anchor internal spatial representations. The neural mechanisms underlying this process and the sources of landmark signals remain […]


Continue.. Visual landmark coding and dynamic coupling with path integration circuits in area 29e of the rodent parahippocampal cortex

A disrupted compartment boundary underlies abnormal cardiac patterning and congenital heart defects

Kavli Affiliate: Denis Wirtz | Authors: Irfan S Kathiriya, Martin H Dominguez, Kavitha S Rao, Jonathon M. Muncie-Vasic, W. Patrick Devine, Kevin M. Hu, Swetansu K Hota, Bayardo I Garay, Diego Quintero, Piyush Goyal, Megan N Matthews, Reuben Thomas, Tatyana Sukonnik, Dario Miguel-Perez, Sarah Winchester, Emily F Brower, André Forjaz, Pei-Hsun Wu, Denis Wirtz, Ashley […]


Continue.. A disrupted compartment boundary underlies abnormal cardiac patterning and congenital heart defects

SLAy-ing oversplitting errors in high-density electrophysiology spike sorting

Kavli Affiliate: Adam S. Charles and Kathleen Cullen | Authors: Sai Koukuntla, Tate DeWeese, Alexandra Cheng, Robyn Mildren, Aamna Lawrence, Austin R Graves, Kathleen E Cullen, Jennifer Colonell, Timothy D Harris and Adam S Charles | Summary: The growing channel count of silicon probes has substantially increased the number of neurons recorded in electrophysiology (ephys) […]


Continue.. SLAy-ing oversplitting errors in high-density electrophysiology spike sorting