Substrate stiffness modulates the emergence and magnitude of senescence phenotypes

Kavli Affiliate: Denis Wirtz | Authors: Bartholomew Starich, Fan Yang, Derin Tanrioven, Heng-Chung Kung, Joanne Baek, Praful R. Nair, Pratik Kamat, Nico Macaluso, Joon Eoh, Kyu Sang Han, Luo Gu, Sean Sun, Pei-Hsun Wu, Denis Wirtz and Jude M. Phillip | Summary: Cellular senescence is a major driver of aging and disease. Here we show […]


Continue.. Substrate stiffness modulates the emergence and magnitude of senescence phenotypes

Brain-state mediated modulation of inter-laminar dependencies in visual cortex

Kavli Affiliate: Anirvan Nandy | Authors: Anirban Das, Alec G. Sheffield, Anirvan S. Nandy and Monika P. Jadi | Summary: Adaptive information processing, comprised of local computations and their efficient routing, is crucial for flexible brain function. Spatial attention is a quintessential example of this adaptive process. It is critical for recognizing and interacting with […]


Continue.. Brain-state mediated modulation of inter-laminar dependencies in visual cortex

Mountable miniature microphones to identify and assign mouse ultrasonic vocalizations

Kavli Affiliate: Erich Jarvis | Authors: Elena N Waidmann, Victor HY Yang, William C Doyle and Erich D Jarvis | Summary: Vocal communication is a major component of animal social behavior. Vocalizations can be learned or innate, and can convey a variety of signals, including territorial limits, the presence of predators, or courtship intent. Mouse […]


Continue.. Mountable miniature microphones to identify and assign mouse ultrasonic vocalizations

A TBX5-dependent compartment boundary patterns the cardiac interventricular septum – Copy

Kavli Affiliate: Erich Jarvis | Authors: César D M Vargas, Rajvi K Agravat, Elena N Waidmann, Christodoulos Bochalis, Hector Bermudez, Theodoros Giannakopoulos and Erich D Jarvis | Summary: Vocalization is a complex behavior ranging from fully innate to advanced vocal learning. Vocal learning species possess a vocal primary motor cortex (M1) region that makes direct […]


Continue.. A TBX5-dependent compartment boundary patterns the cardiac interventricular septum – Copy

Identifying Interpretable Latent Factors with Sparse Component Analysis

Kavli Affiliate: Liam Paninski Mark Churchland | Authors: Andrew J Zimnik, K. Cora Ames, Xinyue An, Laura Driscoll, Antonio H Lara, Abigail A Russo, Vladislav Susoy, John P Cunningham, Liam Paninski, Mark M Churchland and Joshua I Glaser | Summary: In many neural populations, the computationally relevant signals are posited to be a set of […]


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SEraster: a rasterization preprocessing framework for scalable spatial omics data analysis

Kavli Affiliate: Jean Fan | Authors: Gohta Aihara, Kalen Clifton, Mayling Chen, Lyla Atta, Brendan F. Miller and Jean Fan | Summary: Motivation Spatial omics data demand computational analysis but many analysis tools have computational resource requirements that increase with the number of cells analyzed. This presents scalability challenges as researchers use spatial omics technologies […]


Continue.. SEraster: a rasterization preprocessing framework for scalable spatial omics data analysis

A TBX5-dependent compartment boundary patterns the cardiac interventricular septum

Kavli Affiliate: Denis Wirtz | Authors: Irfan S Kathiriya, Martin H Dominguez, Kavitha S Rao, Jonathan M. Muncie-Vasic, W. Patrick Devine, Kevin M. Hu, Swetansu K Hota, Bayardo I Garay, Diego Quintero, Piyush Goyal, Megan N Matthews, Reuben Thomas, Tatyana Sukonnik, Dario Miguel-Perez, Sarah Winchester, Emily F Brower, André Forjaz, Pei-Hsun Wu, Denis Wirtz, Ashley […]


Continue.. A TBX5-dependent compartment boundary patterns the cardiac interventricular septum

Neural substrates underlying the expectation of rewards resulting from effortful exertion

Kavli Affiliate: Vikram Chib | Authors: Aram Kim and Vikram S. Chib | Summary: Expectations as a reference point shape our decisions to motivate effortful activity. Despite the important role of reference points in human performance, little is known about how the brain processes expectations to guide motivated exertion. Participants completed a reward-based effort task […]


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Spatial domain detection using contrastive self-supervised learning for spatial multi-omics technologies

Kavli Affiliate: Brian Caffo Keri Martinowich | Authors: Jianing Yao, Jinglun Yu, Brian Caffo, Stephanie Cerceo Page, Keri Martinowich and Stephanie C Hicks | Summary: Recent advances in spatially-resolved single-omics and multi-omics technologies have led to the emergence of computational tools to detect or predict spatial domains. Additionally, histological images and immunofluorescence (IF) staining of […]


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A spatial model of autophosphorylation of CaMKII in a glutamatergic spine suggests a network-driven kinetic mechanism for bistable changes in synaptic strength

Kavli Affiliate: Terrence Sejnowski | Authors: Thomas M Bartol, Mariam Ordyan, Terrence J Sejnowski, Padmini Rangamani and Mary B. Kennedy | Summary: Activation of N-methyl-D-aspartate-type glutamate receptors (NMDARs) at synapses in the CNS triggers changes in synaptic strength that underlie memory formation in response to strong synaptic stimuli. The primary target of Ca2+ flowing through […]


Continue.. A spatial model of autophosphorylation of CaMKII in a glutamatergic spine suggests a network-driven kinetic mechanism for bistable changes in synaptic strength