Correlation functions quantify super-resolution images and estimate apparent clustering due to over-counting

Kavli Affiliate: Barbara Baird | First 5 Authors: Sarah Veatch, Benjamin Machta, Sarah Shelby, Ethan Chiang, David Holowka | Summary: We present an analytical method to quantify clustering in super-resolution localization images of static surfaces in two dimensions. The method also describes how over-counting of labeled molecules contributes to apparent self-clustering and how the effective […]


Continue.. Correlation functions quantify super-resolution images and estimate apparent clustering due to over-counting

High-Temperature Superconductivity in Atomic Metallic Hydrogen

Kavli Affiliate: Jeffrey McMahon | First 5 Authors: Jeffrey M. McMahon, David M. Ceperley, , , | Summary: Superconductivity in the recently proposed ground-state structures of atomic metallic hydrogen is investigated over the pressure range 500 GPa to 3.5 TPa. Near molecular dissociation, the electron–phonon coupling $λ$ and renormalized Coulomb repulsion are similar to the […]


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Opportunities and limitations of transition voltage spectroscopy: a theoretical analysis

Kavli Affiliate: Joseph M. Thijssen | First 5 Authors: Fatemeh Mirjani, Joseph M. Thijssen, Sense Jan van der Molen, , | Summary: In molecular charge transport, transition voltage spectroscopy (TVS) holds the promise that molecular energy levels can be explored at bias voltages lower than required for resonant tunneling. We investigate the theoretical basis of […]


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Ground-State Structures of Ice at High-Pressures

Kavli Affiliate: Jeffrey McMahon | First 5 Authors: Jeffrey M. McMahon, , , , | Summary: textit{Ab initio} random structure searching based on density functional theory is used to determine the ground-state structures of ice at high pressures. Including estimates of lattice zero-point energies, ice is found to adopt three novel crystal phases. The underlying […]


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Finite Phase-separation FRET II: Determination of domain size from simulated data

Kavli Affiliate: Gerald W. Feigenson | First 5 Authors: Frederick A. Heberle, Gerald W. Feigenson, , , | Summary: We have developed a new model to describe FRET efficiency (E FRET) between freely-diffusing membrane probes in phase-separated bilayers (Finite Phase-separation FRET, or FP-FRET), that in principle applies to any system where phase domain dimensions are […]


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Finite Phase-separation FRET I: A quantitative model valid for bilayer nanodomains

Kavli Affiliate: Gerald W. Feigenson | First 5 Authors: Frederick A. Heberle, Gerald W. Feigenson, , , | Summary: Multicomponent lipid mixtures exhibit complex phase behavior, including coexistence of nanoscopic fluid phases in ternary mixtures mimicking the composition of the outer leaflet of mammalian plasma membrane. The physical mechanisms responsible for the small size of […]


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Limited Perturbation of a DPPC Bilayer by Fluorescent Lipid Probes: A Molecular Dynamics Study

Kavli Affiliate: Gerald W. Feigenson | First 5 Authors: Frederick A. Heberle, David G. Ackerman, Gerald W. Feigenson, , | Summary: The presence and the properties of lipid bilayer nanometer-scale domains might be important for understanding the membranes of living cells. We used molecular dynamics (MD) simulations to investigate perturbations of a small patch of […]


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Application of Mathematical Optimization Procedures to Intervention Effects in Structural Equation Models

Kavli Affiliate: Atsushi Yagishita | First 5 Authors: Kentaro Tanaka, Atsushi Yagishita, Masami Miyakawa, , | Summary: For a given statistical model, it often happens that it is necessary to intervene the model to reduce the variances of the output variables. In structural equation models, this can be done by changing the values of the […]


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An Improved Dynamical Model for the Microquasar XTE J1550-564

Kavli Affiliate: Jeffrey F. Miller | First 5 Authors: Jerome A. Orosz, James F. Steiner, Jeffrey E. McClintock, Manuel A. P. Torres, Ronald A. Remillard | Summary: We present an improved dynamical model of the X-ray binary and microquasar XTE J1550-564 based on new moderate-resolution optical spectroscopy and near-infrared photometry. By combining our new radial […]


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