Klarigi: Characteristic Explanations for Semantic Data

Kavli Affiliate: Simon Ball | Authors: Luke T Slater, John A Williams, Paul N Schofield, Sophie Russell, Samantha C Pendleton, Andreas Karwath, Hilary Fanning, Simon Ball, Robert T Hoehndorf and Georgios V Gkoutos | Summary: Abstract Background Annotation of biomedical entities with ontology terms facilitates the use of background knowledge in analysis. Described entities may […]


Continue.. Klarigi: Characteristic Explanations for Semantic Data

Synaptic vesicle proteins and ATG9A self-organize in distinct vesicle phases within synapsin condensates

Kavli Affiliate: Pietro DeCamilli | Authors: Daehun Park, Yumei Wu, Aaron Baublis and Pietro De Camilli | Summary: Ectopic expression in fibroblasts of synapsin 1 and synaptophysin is sufficient to generate condensates of vesicles highly reminiscent of synaptic vesicle (SV) clusters and with liquid-like properties. We show that unlike synaptophysin, other major integral SV membrane […]


Continue.. Synaptic vesicle proteins and ATG9A self-organize in distinct vesicle phases within synapsin condensates

Closed-loop control and recalibration of place cells by optic flow

Kavli Affiliate: James Knierim | Authors: Manu S Madhav, Ravikrishnan P Jayakumar, Brian Y Li, Francesco Savelli, James J Knierim and Noah J Cowan | Summary: Understanding the interplay between sensory input, endogenous neural dynamics, and behavioral output is key toward understanding the principles of neural computation. Hippocampal place cells are an ideal system to […]


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Functional network properties derived from widefield calcium imaging differ with wakefulness and across cell type

Kavli Affiliate: Michael Crair | Authors: David O’Connor, Francesca Mandino, Xilin Shen, Corey Horien, Xinxin Ge, Peter Herman, Michael Crair, Xenophon Papademetris, Evelyn MR Lake and Robert Todd Constable | Summary: To improve bench-to-bedside translation, it is integral that knowledge flow bidirectionally from – animal models to humans, and vice versa. This will be facilitated […]


Continue.. Functional network properties derived from widefield calcium imaging differ with wakefulness and across cell type

Structure-based Discovery of Conformationally Selective Inhibitors of the Serotonin Transporter

Kavli Affiliate:Allan Basbaum | Authors: Isha Singh, Anubha Seth, Christian B. Billesbolle, Joao Braz, Ramona M. Rodriguiz, Kasturi Roy, Bethlehem Bekele, Veronica Craik, Xi-Ping Huang, Danila Boytsov, Parnian Lak, Henry R O’Donnell, Walter R Sandtner, Bryan L. Roth, Allan Basbaum, William C Wetsel, Aashish Manglik, Brian K. Shoichet and Gary Rudnick | Summary: The serotonin […]


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An Internal Model of Sensorimotor Context in Freely Swimming Electric Fish

Kavli Affiliate: Nathaniel Sawtell | Authors: Avner Wallach and Nathaniel B Sawtell | Summary: Nervous systems are hypothesized to learn and store internal models that predict the sensory consequences of motor actions. However, little is known about the neural mechanisms for generating accurate predictions under real-world conditions in which the sensory consequences of action depend […]


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A Legionella toxin mimics tRNA and glycosylates the translation machinery to trigger a ribotoxic stress response.

Kavli Affiliate: Peter Walter | Authors: Advait Subramanian, Lan Wang, Tom Moss, Mark Voorhies, Smriti Sangwan, Erica Stevenson, Ernst H Pulido, Samentha Kwok, Nevan J Krogan, Danielle L Swaney, Stephen N Floor, Anita Sil, Peter Walter and Shaeri Mukherjee | Summary: Pathogens often secrete proteins or nucleic acids that mimic the structure and/or function of […]


Continue.. A Legionella toxin mimics tRNA and glycosylates the translation machinery to trigger a ribotoxic stress response.

Motor cortical influence relies on task-specific activity covariation

Kavli Affiliate: Costa, Rui | Authors: Claire L Warriner, Samaher Fageiry, Shreya Saxena, Rui M Costa and Andrew Miri | Summary: During limb movement, spinal circuits facilitate the alternating activation of antagonistic flexor and extensor muscles. Yet antagonist cocontraction is often required to stabilize joints, like when loads are handled. Previous results suggest that these […]


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Definition of a saxitoxin (STX) binding code enables discovery and characterization of the Anuran saxiphilin family

Kavli Affiliate: Daniel Minor | Authors: Zhou Chen, Sandra Zakrzewska, Holly S. Hajare, Aurora Alvarez-Buylla, Fayal Abderemane-Ali, Maximiliana Bogan, Dave Ramirez, Lauren A. O’Connell, J. Du Bois and Daniel L. Minor, Jr. | Summary: American bullfrog (Rana castesbeiana) saxiphilin (RcSxph) is a high-affinity ‘toxin sponge’ protein thought to prevent intoxication by saxitoxin (STX), a lethal […]


Continue.. Definition of a saxitoxin (STX) binding code enables discovery and characterization of the Anuran saxiphilin family

Genomic expression responses in sensu stricto Saccharomyces yeast to DNA damage induced by methyl methanesulfonate

Kavli Affiliate: V. S. Ramachandran | Authors: Vignesh Ramachandran, Gregory Hatlestad and Travis White | Summary: Background: One way single-celled eukaryotes respond to DNA damage stress is by modifying their gene expression, facilitating genomic repair. Gene expression responses to DNA damage induced by methyl methanesulfonate (MMS) have been studied in the model organism Saccharomyces cerevisiae. […]


Continue.. Genomic expression responses in sensu stricto Saccharomyces yeast to DNA damage induced by methyl methanesulfonate