Integration of nuclear morphology and 3D imaging to profile cellular neighborhoods

Kavli Affiliate: Denis Wirtz | Authors: AndrĂ© Forjaz, Donald Kramer, Yu Shen, Habin Bea, Margarita Tsapatsis, Jianglu Ping, Vasco Queiroga, Kyu Sang Han, Saurabh Joshi, Casey Grubel, Maria L. Beery, Irina Kusmartseva, Mark A. Atkinson, Ashley L Kiemen and Denis Wirtz | Summary: Nuclear morphology is an indicator of cellular function and disease states, as […]


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JACUZI-SD: An automated, high-throughput, minimally stressful approach to sleep depriving larval zebrafish

Kavli Affiliate: Seth Blackshaw | Authors: Leah J Elias, Harrison Khoo, Francois Kroll, Caroline Zhang, Soojung C Hur, Jason Rihel and Seth Blackshaw | Summary: While sleep deprivation broadly disrupts health and well-being, the neural and molecular mechanisms that signal increased sleep pressure remain poorly understood. A key obstacle to progress is the fact that […]


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Accelerated Discovery of Cell Migration Regulators Using Label-Free Deep Learning-Based Automated Tracking

Kavli Affiliate: Denis Wirtz | Authors: pei-hsun wu, Denis Wirtz, Tiffany Chu, yeongseo lim and Yufei Sun | Summary: Cell migration plays a key role in normal developmental programs and in disease, including immune responses, tissue repair, and metastasis. Unlike other cell functions, such as proliferation which can be studied using high-throughput assays, cell migration […]


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Aging reduces excitatory bandwidth, alters spectral tuning curve diversity, and reduces sideband inhibition in L2/3 of primary auditory cortex

Kavli Affiliate: Patrick Kanold | Authors: Kate Maximov and Patrick O. Kanold | Summary: Presbycusis, or age-related hearing loss, is caused by changes in both the peripheral and the central auditory system. Many of the peripheral structures that degrade with age have been identified and characterized, but there is still a dearth of information pertaining […]


Continue.. Aging reduces excitatory bandwidth, alters spectral tuning curve diversity, and reduces sideband inhibition in L2/3 of primary auditory cortex

Evidence of off-target probe binding in the 10x Genomics Xenium v1 Human Breast Gene Expression Panel compromises accuracy of spatial transcriptomic profiling

Kavli Affiliate: Denis Wirtz | Authors: pei-hsun wu, Denis Wirtz, Tiffany Chu, yeongseo lim and Yufei Sun | Summary: The accuracy of spatial gene expression profiles generated by probe-based in situ spatially-resolved transcriptomic technologies depends on the specificity with which probes bind to their intended target gene. Off-target binding, defined as a probe binding to […]


Continue.. Evidence of off-target probe binding in the 10x Genomics Xenium v1 Human Breast Gene Expression Panel compromises accuracy of spatial transcriptomic profiling

Temporal and Spatial Scales of Resting-state Human Cortical Activity Throughout Lifespan

Kavli Affiliate: Daeyeol Lee | Authors: John Bero IV, Colin Humphries, Yang Li, Aviral Kumar, Heungyeol Lee, Maxwell Shinn, John D. Murray, Timothy Vickery and Daeyeol Lee | Summary: Sensorimotor and cognitive abilities undergo substantial changes throughout the human lifespan, but the corresponding changes in the functional properties of cortical networks remain poorly understood. This […]


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Effective Multiple Scattering Correction for Accurate Quantitative OCT

Kavli Affiliate: Xingde Li | Authors: Cheng-Yu Lee and Xingde Li | Summary: We present an effective approach to compensate for multiple scattering effects in Quantitative Optical Coherence Tomography (qOCT) imaging, with the goal of accurately extracting tissue attenuation coefficients, which is crucial for precise clinical diagnosis. In clinical practice, especially for intra-operative imaging, an […]


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Recurrent patterns of widespread neuronal genomic damage shared by major neurodegenerative disorders

Kavli Affiliate: Michael Miller | Authors: Zinan Zhou, Lovelace J Luquette, Guanlan Dong, Junho Kim, Jayoung Ku, Kisong Kim, Mingyun Bae, Diane D Shao, Bezawit Sahile, Michael B Miller, August Yue Huang, Peter J Park, Clotilde Lagier-Tourenne, Eunjung Alice Lee and Christopher A Walsh | Summary: Amyotrophic lateral sclerosis (ALS), frontotemporal dementia (FTD), and Alzheimer’s […]


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Diverse somatic genomic alterations in single neurons in chronic traumatic encephalopathy

Kavli Affiliate: Michael Miller | Authors: Guanlan Dong, Chanthia C Ma, Shulin Mao, Samuel M Naik, Katherine Sun-Mi Brown, Gannon A McDonough, Junho Kim, Samantha L Kirkham, Jonathan Cherry, Madeline Uretsky, Elizabeth Spurlock, Ann McKee, August Yue Huang, Michael B Miller, Eunjung Alice Lee and Christopher A Walsh | Summary: Chronic traumatic encephalopathy (CTE) is […]


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Effectiveness of Digital Dispersion Compensation in OCT

Kavli Affiliate: Xingde Li | Authors: Fengquan Liu and Xingde Li | Summary: Dispersion mismatch in optical coherence tomography (OCT) is typically addressed through either physical or digital compensation. In this study, we investigate the impact of dispersion on OCT detection sensitivity and compare the effectiveness of physical and digital compensation across varying degrees of […]


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