A Context-Aware Target Engagement and Pharmacodynamic Biomarker Resource to Accelerate Drug Discovery and Development

Kavli Affiliate: Li Zhao | Authors: Yuntao Yang, Li Zhao, Seyedmehdi Orouji, Ying Zhu, Rebecca L Johnson, David S Maxwell, Ioan Mica, Kaitlyn P Russell and Bissan Al-lazikani | Summary: Confirming target engagement in tumor experimental models remains a major challenge in oncology drug development. Pharmacodynamic biomarkers can help address this, but few systematic resources […]


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eSIG-Net: Accurate prediction of single-mutation induced perturbations on protein interactions using a language model

Endothelial type I interferon signaling modulates the vascular response to ischemic brain injury Kavli Affiliate: Li Zhao | Authors: Xingxin Pan, Aditya Shrawat, Sidharth Raghavan, Chuanpeng Dong, Yuntao Yang, Zhao Li, W. Jim Zheng, S. Gail Eckhardt, Erxi Wu, Juan I Fuxman Bass, Daniel F Jarosz, Sidi Chen, Daniel J McGrail, Gloria M Sheynkman, Jason […]


Continue.. eSIG-Net: Accurate prediction of single-mutation induced perturbations on protein interactions using a language model

Epigenomic methylome landscape of promoters in vertebrate genomes

Endothelial type I interferon signaling modulates the vascular response to ischemic brain injury Kavli Affiliate: Erich Jarvis | Authors: Young Ho Lee, Chul Lee, Erich Jarvis and Heebal Kim | Summary: Genomic promoters are crucial gene regulatory elements1,2. Yet, comparative analyses of promoter architecture have been constrained by the limited resolution of GC-rich regions in […]


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The diploid reference genome of a human embryonic stem cell line

Endothelial type I interferon signaling modulates the vascular response to ischemic brain injury Kavli Affiliate: Erich Jarvis | Authors: Ivana Pacar, Matteo Tommaso Ungaro, Ying Chen, Hamza Dallali, Jack A. Medico, Prajna Hebbar, Mark Diekhaus, Elena Di Tommaso, Margarita Geleta, Patricia P. Chan, Todd M. Lowe, Jennifer Balacco, Nivesh Jain, Francine Ackerman, Michela Mochi, Alexander […]


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Non-canonical DNA in bird telomere-to-telomere genomes

Endothelial type I interferon signaling modulates the vascular response to ischemic brain injury Kavli Affiliate: Erich Jarvis | Authors: Linnea Smeds, Jacob P Sieg, Simona Secomandi, Chul Lee, Marco Sollitto, Jack A Medico, Francesca Chiaromonte, Erich D Jarvis, Giulio Formenti and Kateryna D Makova | Summary: Non-canonical (non-B) DNA motifs are sequences that can fold […]


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Homozygosity for rare or common hypomorphic IL23R variants confers a predisposition to tuberculosis in humans

Kavli Affiliate: Jean-Laurent Casanova | Authors: Diana Olguin Calderon, Laura E. Kilpatrick, Clement Conil, Quentin Philippot, Masato Ogishi, Joseph Vellutini, Ji Eun Han, Narelle Keating, Hailun Li, Geetha Rao, Jonathan Bohlen, Charles S. Lay, Simon Platt, Gaspard Kerner, Elsa Feredj, Jessica Peel, Mana Momenilandi, Yoann Seeleuthner, Candice Laine, camille soudee, Claire Leloup, Cecile Debuisson, Fanny […]


Continue.. Homozygosity for rare or common hypomorphic IL23R variants confers a predisposition to tuberculosis in humans

GPCRs as Targets for Human Brain Modulation: A Multi-omic Atlas of Cell-Type Specific Expression

Kavli Affiliate: Nathaniel Heintz | Authors: Alan Umfress, Patrick Wertimer, Christina Pressl, Matthew Baffuto, Kert Mätlik, Franchesca Fernandez, Maria Esterlita Siantoputri, Ines Ibañez-Tallon and Nathaniel Heintz | Summary: G Protein coupled receptors (GPCRs) are the largest class of clinically validated drug targets with nearly 35% of all approved therapeutic agents acting on these receptors. To […]


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SLC33A1 exports oxidized glutathione to maintain endoplasmic reticulum redox homeostasis

Kavli Affiliate: Ekaterina V. Vinogradova | Authors: Shanshan Liu, Mark Gad, Caifan Li, Kevin Cho, Yuyang Liu, Khando Wangdu, Viktor Belay, Alon Millet, Hiroyuki Kojima, Henry Sanford, Michele Wolk, Linas Urnavicius, Maria Fedorova, Gary J. Patti, Ekaterina V. Vinogradova, Richard K. Hite and Kivanc Birsoy | Summary: The endoplasmic reticulum (ER) requires an oxidative environment […]


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A post-translational regulatory map of chronic antigen-driven human T cell dysfunction.

Kavli Affiliate: Ekaterina V. Vinogradova | Authors: Hiroyuki Kojima, Charlotte R Wayne, Luis F. Somarribas Patterson, Henry Sanford, Tzu-Jou Chen, Ya-Hui Lin, Joshua D. Schoenfeld, Lisa H. F. McGary, Yan-Ting Chen, Korbinian N. Kropp, Beatrice Zhang, Jahan Rahman, Tiffany L. Zhang, Nathalie Ropek, Cameron Roberts, Yuxi Ai, Kartikeya Menon, A. Ari Hakimi, Jiankun Lyu, Christopher […]


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Loss of interruption in the HTT CAG repeat is associated with increased somatic expansion and loss of medium spiny neurons in HD

Kavli Affiliate: Nathaniel Heintz | Authors: Chris Kay, Jessica Dawson, Kert Mätlik, Hailey Findlay Black, Emily Harvey, Stephanie Bortnick, Kyla Javier, Christina Buchanan, Tanu Soomarooah, Inês Caldeira Brás, Glen Sequiera, Mahmoud Pouladi, Larissa Arning, Hoa HP Nguyen, Richard Roxburgh, Maurice Curtis, Richard LM Faull, Nathaniel Heintz and Michael R Hayden | Summary: Synonymous loss of […]


Continue.. Loss of interruption in the HTT CAG repeat is associated with increased somatic expansion and loss of medium spiny neurons in HD